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decoupler.benchmark
decoupler.format_benchmark_inputs
decoupler.get_performances
get_performances()
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Cell type annotation from marker genes
Pathway activity inference
Transcription factor activity inference
Functional enrichment of biological terms
Pseudo-bulk functional analysis
Spatial functional analysis
Bulk functional analysis
Benchmarking pipeline
Conversion to other organisms
decoupler
API
decoupler.get_performances
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decoupler.get_performances
decoupler.
get_performances
(
res
,
obs
,
groupby
,
by
,
metrics
,
min_exp
=
5
,
pi0
=
0.5
,
n_iter
=
1000
,
seed
=
42
,
verbose
=
False
)
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