decoupler.summarize_acts
- decoupler.summarize_acts(acts, groupby, obs=None, var=None, mode='mean', min_std=1.0)
Summarizes activities obtained per group by their mean or median.
- Parameters:
- actsAnnData or pd.DataFrame
Activities obtained after running a method.
- groupbystr
Column name of obs to use for grouping.
- obspd.DataFrame
None or a data-frame with sample meta-data.
- varpd.DataFrame
None or a data-frame with feature meta-data.
- modestr
Wheter to use mean or median to summarize.
- min_stdfloat
Minimum std to filter out features.
- Returns:
- Data-frame with summaried actvities per group.