decoupler.get_resource

decoupler.get_resource(name: str, organism: str | int = 'human', **kwargs) → DataFrame

Wrapper to access resources inside Omnipath.

This wrapper allows to easly query different prior knowledge resources. To check available resources run decoupler.show_resources(). For more information visit the official website for [Omnipath](https://omnipathdb.org/).

Parameters:

namestr

Name of the resource to query.

organismint | str

The organism of interest: either NCBI Taxonomy ID, common name, latin name or Ensembl name. Organisms other than human will be translated from human data by orthology.

kwargs

Passed to omnipath.requests.Annotations.get.

Returns:

dfDataFrame

Dataframe in long format relating genes to biological entities.