decoupler.plot_filter_by_prop
- decoupler.plot_filter_by_prop(adata, min_prop=0.2, min_smpls=2, cmap='viridis', figsize=(5, 4), dpi=100, ax=None, return_fig=False, save=None, **kwargs)
Plot to help determining the thresholds of the
decoupler.filter_by_propfunction.- Parameters:
- adataAnnData
AnnData obtained after running
decoupler.get_pseudobulk. It requieres.layer['psbulk_props'].- min_propfloat
Minimum proportion of cells that express a gene in a sample.
- min_smplsint
Minimum number of samples with bigger or equal proportion of cells with expression than
min_prop.- cmapstr
Colormap to use.
- figsizetuple
Figure size.
- dpiint
DPI resolution of figure.
- axAxes, None
A matplotlib axes object. If None returns new figure.
- return_figbool
Whether to return a Figure object or not.
- savestr, None
Path to where to save the plot. Infer the filetype if ending on {
.pdf,.png,.svg}.- kwargsdict
Other keyword arguments are passed through to
matplotlib.pyplot.hist.
- Returns:
- figFigure, None
If return_fig, returns Figure object.