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Main
Installation
API
Preprocessing:
Methods:
Running multiple methods:
General utils:
AnnData utils:
Omnipath wrappers:
Plotting
Metrics
Benchmark utils
Benchmark
decoupler.benchmark
decoupler.format_benchmark_inputs
decoupler.get_performances
get_performances()
Other
Release notes
Reference
Vignettes
Usage
Cell type annotation from marker genes
Pathway activity inference
Transcription factor activity inference
Functional enrichment of biological terms
Pseudo-bulk functional analysis
Spatial functional analysis
Bulk functional analysis
Benchmarking pipeline
Conversion to other organisms
decoupler
API
decoupler.get_performances
Edit on GitHub
decoupler.get_performances
decoupler.
get_performances
(
res
,
obs
,
groupby
,
by
,
metrics
,
min_exp
=
5
,
pi0
=
0.5
,
n_iter
=
1000
,
seed
=
42
,
verbose
=
False
)