decoupler.summarize_acts

decoupler.summarize_acts(acts, groupby, obs=None, mode='mean', min_std=1.0)

Summarizes activities obtained per group by their mean or median and removes features that do not change across samples.

Parameters:

actsAnnData or DataFrame: Activities obtained after running a method.
groupbystr: Column name of obs to use for grouping.
obsDataFrame: None or a data-frame with sample meta-data.
modestr: Wheter to use mean or median to summarize.
min_stdfloat: Minimum std to filter out features. Only features with enough variability will be returned. Decrease it to return more features.

Returns: