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Usage
Cell type annotation from marker genes
Pathway activity inference
Transcription factor activity inference
Functional enrichment of biological terms
Pseudo-bulk functional analysis
Spatial functional analysis
Bulk functional analysis
Benchmarking pipeline
Conversion to other organisms
decoupler
Index
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Index
A
|
B
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C
|
D
|
E
|
F
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G
|
M
|
P
|
R
|
S
|
T
A
assign_groups() (in module decoupler)
B
benchmark() (in module decoupler)
C
check_corr() (in module decoupler)
cons() (in module decoupler)
D
decouple() (in module decoupler)
decoupler
module
dense_run() (in module decoupler)
E
extract() (in module decoupler)
F
filt_min_n() (in module decoupler)
filter_by_expr() (in module decoupler)
filter_by_prop() (in module decoupler)
format_benchmark_inputs() (in module decoupler)
format_contrast_results() (in module decoupler)
G
get_acts() (in module decoupler)
get_collectri() (in module decoupler)
get_contrast() (in module decoupler)
get_dorothea() (in module decoupler)
get_gsea_df() (in module decoupler)
get_metadata_associations() (in module decoupler)
get_net_mat() (in module decoupler)
get_ora_df() (in module decoupler)
get_performances() (in module decoupler)
get_progeny() (in module decoupler)
get_pseudobulk() (in module decoupler)
get_resource() (in module decoupler)
get_top_targets() (in module decoupler)
get_toy_benchmark_data() (in module decoupler)
get_toy_data() (in module decoupler)
M
match() (in module decoupler)
melt() (in module decoupler)
metric_auprc() (in module decoupler)
metric_auroc() (in module decoupler)
metric_mcauprc() (in module decoupler)
metric_mcauroc() (in module decoupler)
module
decoupler
P
p_adjust_fdr() (in module decoupler)
plot_associations() (in module decoupler)
plot_barplot() (in module decoupler)
plot_barplot_df() (in module decoupler)
plot_dotplot() (in module decoupler)
plot_filter_by_expr() (in module decoupler)
plot_filter_by_prop() (in module decoupler)
plot_metrics_boxplot() (in module decoupler)
plot_metrics_scatter() (in module decoupler)
plot_metrics_scatter_cols() (in module decoupler)
plot_network() (in module decoupler)
plot_psbulk_samples() (in module decoupler)
plot_running_score() (in module decoupler)
plot_targets() (in module decoupler)
plot_violins() (in module decoupler)
plot_volcano() (in module decoupler)
plot_volcano_df() (in module decoupler)
R
rank_sources_groups() (in module decoupler)
read_gmt() (in module decoupler)
rename_net() (in module decoupler)
run_aucell() (in module decoupler)
run_consensus() (in module decoupler)
run_gsea() (in module decoupler)
run_gsva() (in module decoupler)
run_mdt() (in module decoupler)
run_mlm() (in module decoupler)
run_ora() (in module decoupler)
run_udt() (in module decoupler)
run_ulm() (in module decoupler)
run_viper() (in module decoupler)
run_wmean() (in module decoupler)
run_wsum() (in module decoupler)
S
show_methods() (in module decoupler)
show_metrics() (in module decoupler)
show_resources() (in module decoupler)
shuffle_net() (in module decoupler)
summarize_acts() (in module decoupler)
swap_layer() (in module decoupler)
T
translate_net() (in module decoupler)
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